PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.111110.1
Common NameCsa_1G024150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 266aa    MW: 29614.3 Da    PI: 7.4173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.111110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08158205455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  Cucsa.111110.1 158 SHSLAERVRRGKINERLRCLKDIVPGC----YKTMGMAVMLDEIINYVQSLQ 205
                     8*************************9....35599999**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.16E-10152209No hitNo description
SuperFamilySSF474593.93E-16152222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.123154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MADHDFPSSF PLEDPNLELM ASHFSSSIPN FTHFLPFSTT NTEIFSQFPP NFPENNATSF  60
TTSPVLPSHS VFPPAPTPSV STTTHHHFHD INNKRKSMPM DVSESTSGIS TPQVSESGFN  120
TKYSSGKGKR LKSLEKEEEK STREVVHVRA RRGQATDSHS LAERVRRGKI NERLRCLKDI  180
VPGCYKTMGM AVMLDEIINY VQSLQNQVEF LSMKLAAASS FYDFNSEADA ISKLQRAKAH  240
EAKELERLMK EGYGGIACFH SNLPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818131e-153LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132561e-153LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137542.10.0PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK71e-65BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A0A0LS360.0A0A0A0LS36_CUCSA; Uncharacterized protein
STRINGGLYMA09G31580.23e-86(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-64BR enhanced expression 3
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]